Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs56964775 chr12:58340534 T/G 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs57004700 chr20:29528511 C/T 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs57105177 chr7:29695016 ACTTT/A 4.29E-13 119 38.13 46.27 6 KM Plot
THYM rs57152914 chr3:118932915 TAAA/T 7.72E-13 118 45.87 32.7 3.83 KM Plot
THYM rs57204766 chr20:29531388 G/T 1.95E-13 119 38.13 50.1 6 KM Plot
THYM rs57253003 chr7:29686556 T/C 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs57320824 chr2:30659006 C/T 0 119 36.4 50.47 12.63 KM Plot
THYM rs57384735 chr13:26631371 A/C 3.01E-6 118 41.77 40.67 13.75 KM Plot
THYM rs57385687 chr4:1313573 T/TC 4.67E-7 119 41.77 47.97 19.23 KM Plot
THYM rs57394812 chr12:122145069 A/T 0 117 42.9 36.4 4.13 KM Plot
THYM rs5749071 chr22:30742125 A/C 0.000319 119 27.1 50.97 38.58 KM Plot
THYM rs57556979 chr4:1313571 C/CCCAACA 4.67E-7 119 41.77 47.97 19.23 KM Plot
THYM rs57579777 chr20:50126266 A/T 2.37E-8 115 39.75 87.57 12.63 KM Plot
THYM rs57616694 chr2:219051496 A/T 3.27E-6 118 41.22 42.9 25.83 KM Plot
THYM rs57683928 chr21:45587936 C/T 0.000116 118 38.58 51.23 28.43 KM Plot